Protein Info for ABZR86_RS00310 in Dyella japonica UNC79MFTsu3.2

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 transmembrane" amino acids 164 to 185 (22 residues), see Phobius details PF12852: Cupin_6" amino acids 2 to 185 (184 residues), 114.9 bits, see alignment E=5.7e-37 PF12833: HTH_18" amino acids 225 to 301 (77 residues), 67.1 bits, see alignment E=2.1e-22

Best Hits

KEGG orthology group: None (inferred from 56% identity to bpy:Bphyt_5450)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2C9Z6 at UniProt or InterPro

Protein Sequence (304 amino acids)

>ABZR86_RS00310 AraC family transcriptional regulator (Dyella japonica UNC79MFTsu3.2)
MDALSRLIQLAQLQGNLDVRCQFAGGFAVDHGEAPRGEALFHLVLDGGCAVEPAGETPLL
LEAGDLVMFPHGAPHLVRDLAGSASRAPVRYEHDGLLPLRRNADGPAELDLLCGRFRYAP
ASASLLLSTLPATLKVSLRDSAGLDALQALVALMRHEAGQRQPGALAVVTALTHALFALA
LRAYAAGDAQRSGLLPLLADARLGAAMQAMLADPARNWTLEELGRVAAMSRASFARHFGE
RAGMTPGECLARLRMQIAGDLLLRTRRRTGDIGQDVGYQSEAAFGKAFRHYMGSTPARFR
REHA