Protein Info for ABIE53_006500 in Paraburkholderia graminis OAS925

Annotation: tripartite ATP-independent transporter DctM subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 49 to 69 (21 residues), see Phobius details amino acids 134 to 149 (16 residues), see Phobius details amino acids 155 to 173 (19 residues), see Phobius details amino acids 182 to 204 (23 residues), see Phobius details amino acids 226 to 254 (29 residues), see Phobius details amino acids 260 to 279 (20 residues), see Phobius details amino acids 291 to 311 (21 residues), see Phobius details amino acids 331 to 358 (28 residues), see Phobius details amino acids 362 to 364 (3 residues), see Phobius details amino acids 368 to 391 (24 residues), see Phobius details amino acids 417 to 440 (24 residues), see Phobius details PF06808: DctM" amino acids 8 to 435 (428 residues), 337.5 bits, see alignment E=5.7e-105 TIGR00786: TRAP transporter, DctM subunit" amino acids 17 to 441 (425 residues), 368.6 bits, see alignment E=1.8e-114

Best Hits

KEGG orthology group: None (inferred from 98% identity to bug:BC1001_5604)

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, large permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (450 amino acids)

>ABIE53_006500 tripartite ATP-independent transporter DctM subunit (Paraburkholderia graminis OAS925)
MELALLSISFIVFLVLGVPVSFALGLSCVLTYLYEGLPAATAMQSMVSGMNAFSFLAVPF
FIFSGELMLHGGIADRILRFAQATVGHFRGGLGMANVVACTLFGGVSGSPTADTSAMGGV
IIPLMKREGYSAAYAVNVTTHSSLAGALMPTSTNMIIYAFAAQGITGTLNGVPMSGVSIG
DLLFSGLLPVLWVMGFVLIAAYWQAVRYGYPRRPDGSTGLQRFPGWLAVARTFLGALPGL
MVIAIILVCVAKGIATATEAAAIAVAYSLVLTVVVYRTMTLKKLSFALSKAAKTTGVVLL
LIGVSNMLRYQMAYLEIPDAIEHMLDGATSIPWLMLLYINIIQIFLGTFVDMAAHILITT
PLFLPMAMHSGVGPVQFGIMILLNCALGLVHPPIGSVQFIGCAIGNVSIGETTKVAWPYY
LAIFSAINIVTYVPMFSTWLPSLINGHPVF