Protein Info for ABIE53_006433 in Paraburkholderia graminis OAS925

Annotation: DeoR/GlpR family transcriptional regulator of sugar metabolism

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 265 PF08279: HTH_11" amino acids 20 to 61 (42 residues), 27.1 bits, see alignment 4.8e-10 PF08220: HTH_DeoR" amino acids 20 to 71 (52 residues), 58.4 bits, see alignment E=7e-20 PF00455: DeoRC" amino acids 88 to 244 (157 residues), 142.4 bits, see alignment E=1.9e-45

Best Hits

Swiss-Prot: 33% identical to GLPR_HALVD: HTH-type transcriptional regulator GlpR (glpR) from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)

KEGG orthology group: None (inferred from 88% identity to bpy:Bphyt_4951)

Predicted SEED Role

"FIG000557: hypothetical protein co-occurring with RecR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (265 amino acids)

>ABIE53_006433 DeoR/GlpR family transcriptional regulator of sugar metabolism (Paraburkholderia graminis OAS925)
MQRTDRAIRLPETSVLTSQRKQLILEALRRDGQVVAKTLSAEFDVSEDTIRRDLRELATE
GQLQRVHGGALPASPAAVDLAGRERIESASKAAIGRAAAGMIAPGQIAFVDGGTTAVQLA
RHLPRDLRATIVTHSPSIAVELAGHAQLEVVMIGGRLFRHSMVNVGAAAIEALSHIRADL
YFMGVTGVHPQAGLSTGDIEEAYVKRALAEHAAETVVLASAEKLNAASAYRIADVSAAST
IVVERGTAETLTAPFEALGLTVVRA