Protein Info for ABIE53_006372 in Paraburkholderia graminis OAS925

Annotation: microcin C transport system ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 552 PF00005: ABC_tran" amino acids 27 to 183 (157 residues), 102.1 bits, see alignment E=1.7e-32 amino acids 306 to 460 (155 residues), 117.3 bits, see alignment E=3.4e-37 PF08352: oligo_HPY" amino acids 238 to 264 (27 residues), 22.5 bits, see alignment (E = 4.7e-08) amino acids 511 to 534 (24 residues), 22.2 bits, see alignment (E = 5.9e-08)

Best Hits

KEGG orthology group: K13896, microcin C transport system ATP-binding protein (inferred from 91% identity to bgf:BC1003_5817)

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (552 amino acids)

>ABIE53_006372 microcin C transport system ATP-binding protein (Paraburkholderia graminis OAS925)
MNRTANERPLLEIEGFSARFGDRLAVRDLSLSIARGERVALVGESGSGKSVTALSILRLV
DHAELGGRILLDGDDLLRKTEQEMRGVRGADVAMVFQEPMTALNPLFTIGKQIAESVRLH
EGVRPNAARARGIELLRRTGIPEPERRIDSFPHQLSGGQRQRAMIAMALACRPRLLLADE
PTTALDVTVRQQIVDLLIELQEQEAAERGMAVLLITHDLNLVRRFAQRVAVMEKGVLVET
NTTEALFGDPQHPYTRRLLDSEPRRSIAPLGKGARRLLEVQGLCVDYSTPAKGWRSLVRR
STFRAVHDVDLSLRRGETLGIAGESGSGKSTLAATVLGLQRAAAGHVHIDGMPLSTLRSA
SSRRALYSRMQVVFQDPFGSLSPRMTVEQIVGEGLAVHRPEIDAKARRARVASLLDEVGL
PADAMPRYPHEFSGGQRQRIAIARALAVEPELLVLDEPTSALDVSIQQQVLALLVHLQNT
RKLSYLLITHDLAVMRAVAHRVIVMKSGRVVESGDTLDVLRAPSHPYTRSLLASSLLSPL
PEPTPNLRSLND