Protein Info for ABIE53_006371 in Paraburkholderia graminis OAS925

Annotation: putative Zn-dependent protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 478 PF01523: PmbA_TldD_1st" amino acids 20 to 82 (63 residues), 22.3 bits, see alignment E=1.2e-08 PF19289: PmbA_TldD_3rd" amino acids 231 to 474 (244 residues), 109.9 bits, see alignment E=1.1e-35

Best Hits

KEGG orthology group: None (inferred from 92% identity to bxe:Bxe_A2989)

Predicted SEED Role

"TldD family protein, Beta/Gamma-proteobacterial subgroup" in subsystem Putative TldE-TldD proteolytic complex

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (478 amino acids)

>ABIE53_006371 putative Zn-dependent protease (Paraburkholderia graminis OAS925)
MIDERWVQAARSLTSRAGFWSLRIVDERIDDHEVRNDVAQPLRTVRDRGAMLIAWVGAGA
GYAATANLSAAGLQHALDLASARAEASAALSLIDHREVARPSVSGEYVSPNAQHALPGRA
EWIDRLSAECAAAKLDSRIVERVAAVQITHTDQFYMTGDGVRIDQRFRFVMPQLSVAAHA
DGDTQVRTLGGNYGTLAQGGMDVLARFGFDGAGPRVATEALQLLAAPNCPSGKRDLLLMP
DQMMLQIHESIGHPLELDRILGDERNFAGWSFVKPDMFGSYRYGSELLNVTFDPELREEA
ASYAFDDDGTEARKEYLIRNGVLERPLGGALSQQRAGMPGVANSRASNWNRPPIDRMANL
NIEPGDSSLDEMIGNIEHGILMRTNTSWSIDDHRNKFQFGCEFGQLIENGKLTQIVKQPN
YRGISANFWRSLSAVGNADTREVFGTPMCGKGEPAQVIRVGHASPACVFSNVDVFGGA