Protein Info for ABIE53_006370 in Paraburkholderia graminis OAS925

Annotation: putative Zn-dependent protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 PF19289: PmbA_TldD_3rd" amino acids 176 to 397 (222 residues), 83.7 bits, see alignment E=5.7e-28

Best Hits

KEGG orthology group: None (inferred from 86% identity to bpy:Bphyt_1453)

Predicted SEED Role

"TldE/PmbA family protein, Beta/Gamma-proteobacterial subgroup" in subsystem Putative TldE-TldD proteolytic complex

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (399 amino acids)

>ABIE53_006370 putative Zn-dependent protease (Paraburkholderia graminis OAS925)
MRQSGTVSQGKLTLRLIDGARQAYSTLTVCGDLQQDIDEVSAALAMLRQALRDAADDPHL
LVDTSAWQRTTRRSGKLPDPHGLSRIVGECARGLDFVGFYAGGTIVRGFASTHGSRGWYE
VDNFNFSWSLYDPSGRAIKTTYAGDDWSDAVFAAKVEQAAGRLAVLARAPRVLAPGAYRA
WLAPAALAELLGVTAWRGFSARAQASSRSELYKLHVGEVALDPRVSIAEELELGIAPAFN
EDGYLRERVALIDAGRSAGTLTNARSAREYGLTPNGALAEEAPTSLAMQAGGLADHDVLA
RIGTGLYVGNLWYVNFSDRMNCRLTGMTRFATFWVEDGQIVAPLDAMRFDDSLYRLLGSE
LEELGAQAELLLSDGTWGERATGGMQLPGILARSFQLTL