Protein Info for ABIE53_006367 in Paraburkholderia graminis OAS925

Annotation: DNA-binding transcriptional LysR family regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 PF00126: HTH_1" amino acids 11 to 65 (55 residues), 72.9 bits, see alignment E=1.6e-24 PF03466: LysR_substrate" amino acids 91 to 294 (204 residues), 139.5 bits, see alignment E=1e-44

Best Hits

KEGG orthology group: None (inferred from 87% identity to bam:Bamb_3339)

Predicted SEED Role

"Transcriptional regulator, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (302 amino acids)

>ABIE53_006367 DNA-binding transcriptional LysR family regulator (Paraburkholderia graminis OAS925)
MAQVDTFSGILIFVTAAKSRSFTDAAEELGLTKSAVGKAIAKLEDRLGAQLFHRTTRSIS
LTADGDAYFAACASALDEISTAETALGPGNQRPVGRLRIDMPAAFGRRILVPILLDIGRK
HPDLQFTMTFSDHLIDPIEEGVDLVIRFGELESSSGLVARRLTSQRMVIAASPDYLAQRG
TPGTLEDLKNHSCIVGHRRGQPLSWRVNVDGEVSRISPPATHQISDGDSIVEAALAGLGL
CQMPMSLLRPHLESGMLISVLEDVSSEFIDVHAVWPKVAHLRSKVRHVVDTFVELAEQGR
LD