Protein Info for ABIE53_006347 in Paraburkholderia graminis OAS925

Annotation: peptide/nickel transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 transmembrane" amino acids 9 to 27 (19 residues), see Phobius details amino acids 99 to 122 (24 residues), see Phobius details amino acids 134 to 156 (23 residues), see Phobius details amino acids 174 to 195 (22 residues), see Phobius details amino acids 235 to 256 (22 residues), see Phobius details amino acids 282 to 307 (26 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 1 to 102 (102 residues), 48.3 bits, see alignment E=1.1e-16 PF00528: BPD_transp_1" amino acids 113 to 313 (201 residues), 141.6 bits, see alignment E=2.5e-45

Best Hits

Swiss-Prot: 41% identical to Y1050_BRUA2: Putative peptide transport system permease protein BAB2_1050 (BAB2_1050) from Brucella abortus (strain 2308)

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 91% identity to bph:Bphy_6650)

Predicted SEED Role

"Putative glutathione transporter, permease component" in subsystem Utilization of glutathione as a sulphur source

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (314 amino acids)

>ABIE53_006347 peptide/nickel transport system permease protein (Paraburkholderia graminis OAS925)
MLRIIANRVLVAIPTLILVSMLIFGLQKLLPGDPVTAMAGEDQDPQLIASLRVKYHLDEP
VPTQYALWVRDVVRGDLGASLRTDVPVTSLIAQKLPVTLQLAAMAMIFAIGIGIPAGVIS
AASRGGALDYGANVFALSGMSIPNFWLGIMLIFIVSVRWHLLPSSGYVSPTEDFWLSIKT
MLMPAFVLGASLGAQLMRHTRSAMLSVLRTDYIRTARAKGLLRGTVVVKHAFRNALVPIV
TVLALLFGELLAGAVLTEQVFTIPGFGKLIVDAVFNRDYAVVQGVVLVTALCFIVVNLCA
DVLYVLLNPRLRRS