Protein Info for ABIE53_006276 in Paraburkholderia graminis OAS925
Annotation: sulfonate transport system ATP-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 86% identical to SSUB2_PARXL: Aliphatic sulfonates import ATP-binding protein SsuB 2 (ssuB2) from Paraburkholderia xenovorans (strain LB400)
KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 89% identity to bgf:BC1003_5981)Predicted SEED Role
"Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (250 amino acids)
>ABIE53_006276 sulfonate transport system ATP-binding protein (Paraburkholderia graminis OAS925) MNQPTAPSRDRAAAAPSHERERERIGTQALAVSVRGLKRRYGSRVVIDSLDLDIQKGEFV ALLGESGCGKTTLLRALAGLDQPDAGTIRAPERPSVVFQEPRLLPWAPLWENVALGHERT IGRDGAARALAEVGLAGREDDWPRNLSGGQAQRVALARALVPDPALLLLDEPFAALDALT RIKMHGLVKELVALHQPGVLIVTHDVDEALTLADRIIVMRAGRIAASFRPKDHAGTLRSI LLEELGVQSH