Protein Info for ABIE53_006175 in Paraburkholderia graminis OAS925

Annotation: putative ABC transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 857 transmembrane" amino acids 34 to 54 (21 residues), see Phobius details amino acids 267 to 290 (24 residues), see Phobius details amino acids 315 to 343 (29 residues), see Phobius details amino acids 364 to 385 (22 residues), see Phobius details amino acids 406 to 426 (21 residues), see Phobius details amino acids 438 to 463 (26 residues), see Phobius details amino acids 494 to 516 (23 residues), see Phobius details amino acids 726 to 751 (26 residues), see Phobius details amino acids 771 to 803 (33 residues), see Phobius details amino acids 817 to 841 (25 residues), see Phobius details PF12704: MacB_PCD" amino acids 35 to 237 (203 residues), 28.5 bits, see alignment E=1.8e-10 amino acids 494 to 697 (204 residues), 30.7 bits, see alignment E=3.8e-11 PF02687: FtsX" amino acids 268 to 390 (123 residues), 63.1 bits, see alignment E=2.4e-21 amino acids 732 to 845 (114 residues), 54.4 bits, see alignment E=1.2e-18

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 87% identity to bgf:BC1003_5848)

Predicted SEED Role

"AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (857 amino acids)

>ABIE53_006175 putative ABC transport system permease protein (Paraburkholderia graminis OAS925)
MTPADSYRPARTRGHRTLARWLLGAEWRSHRGRALVAIATIALGVALGYAVQLINSAAFN
EFSAAARSLSGQADLQVRGAQPLFDESIYPRVATRAGVALASPVLALDVSVHEYNAALPV
LGIDVFRASRIAPDLIGVPSAAQPLDTLASDAVFLSTAAQQWLHVKTGDQIVLQNGTALV
HLRVAGGIARTRPGQRLAIMDIAAVQWKFGKVGKLSRIDVQLKRGVDRERFKRDLQKELG
SQWIIAETRDVESRTDRLSRAYRINMNVLALVALFTGAFLVFSTQALSVVRRRAQFAMLR
VLGLTRGQLLRQILFEGALLGLLGSLCGLALGYALAAGALRFFGSDLGGGYFPGVQPQVG
FEPLASALFLTLGIAVAVLGSLAPALEAARARPASALKAGAEEGALARLATPWPALLCLL
IAALLTQAPPWFDAPIGGYVAVALLLIGGIALMPRVTALVFGATSRGLAARPRSGVASTL
ALARLANAPGHASIAMGGVLSSFALIVAMAIMVASFRVSVEDWLVHLLSADLYVRVAQNG
DTGGLSADEQRRLASVPGVARAAFTRASHITLDPARPDIAILAREIDVADPGANLQMTGP
VLGIRDLHGDETPVWVSEAMIDLYGYKLGQRVHLPIGERGHAFVVAGVWRDYVRQSGAIQ
IRLADYRRLTTDMSATDVAVSVERGASVESVIAGLRALPFGAMLQIAQPGDIRARTLVIF
DRSFAVTYLLEAVAIVIGLFGVAATFSAQTLARAREFGMLRHVGVTRSQILAVLALEGGL
LTACGIAMGFVLGFAISLILVFVVNPQSFHWSMSLHVPWIILGTVALVMLASSCSTAVLA
GRGAVSVDALRAVKEDW