Protein Info for ABIE53_006099 in Paraburkholderia graminis OAS925

Annotation: erythritol transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 355 transmembrane" amino acids 26 to 46 (21 residues), see Phobius details amino acids 58 to 78 (21 residues), see Phobius details amino acids 81 to 103 (23 residues), see Phobius details amino acids 107 to 134 (28 residues), see Phobius details amino acids 140 to 159 (20 residues), see Phobius details amino acids 182 to 208 (27 residues), see Phobius details amino acids 239 to 258 (20 residues), see Phobius details amino acids 270 to 286 (17 residues), see Phobius details amino acids 293 to 312 (20 residues), see Phobius details amino acids 318 to 335 (18 residues), see Phobius details PF02653: BPD_transp_2" amino acids 58 to 331 (274 residues), 148.5 bits, see alignment E=1.1e-47

Best Hits

Swiss-Prot: 42% identical to RBSC_HAEIN: Ribose import permease protein RbsC (rbsC) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K10440, ribose transport system permease protein (inferred from 72% identity to oan:Oant_3061)

MetaCyc: 51% identical to putative erythritol ABC transporter membrane protein (Brucella abortus 2308)
7.5.2.-

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (355 amino acids)

>ABIE53_006099 erythritol transport system permease protein (Paraburkholderia graminis OAS925)
MTVAIKSAAPGANLGEAPLLLLLKLRTFIALFAVVIFFSFAAHNFLSIENLLIMSRHVAL
NAFLAIGMTFVIVAGGIDLSVGSIVGLSGMIAGGLILNGIPLGSSYTLYLSVPEVIGVAL
LSGVAVGAVNGLLITRLNVAPFIATLGTLYIARGAALLSSGGETFPNLTGNPDFGTTGFP
ILGSSSILGIPLTIWLLVVVGAFAAYLAARTPLGRQIYAIGSNERAAQLSGVRVNRVKMF
VYMFSGFCAAIVGLIISSELVASHPLSGETFELNAIAAAVLGGTSMSGGRGKIGGTIIGA
FVIGILSDGLVMMGVSSFWQTVIKGVVIVAAVVVDQIQRRVQQRFALQKQAATGA