Protein Info for ABIE53_006076 in Paraburkholderia graminis OAS925

Annotation: ACS family tartrate transporter-like MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 435 transmembrane" amino acids 26 to 43 (18 residues), see Phobius details amino acids 65 to 87 (23 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details amino acids 121 to 146 (26 residues), see Phobius details amino acids 154 to 176 (23 residues), see Phobius details amino acids 189 to 210 (22 residues), see Phobius details amino acids 254 to 275 (22 residues), see Phobius details amino acids 289 to 308 (20 residues), see Phobius details amino acids 317 to 338 (22 residues), see Phobius details amino acids 344 to 363 (20 residues), see Phobius details amino acids 374 to 397 (24 residues), see Phobius details amino acids 409 to 431 (23 residues), see Phobius details PF07690: MFS_1" amino acids 34 to 394 (361 residues), 147.5 bits, see alignment E=2.5e-47

Best Hits

Swiss-Prot: 45% identical to TUB3_AGRVI: Putative tartrate transporter (ttuB) from Agrobacterium vitis

KEGG orthology group: None (inferred from 85% identity to bcm:Bcenmc03_4806)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (435 amino acids)

>ABIE53_006076 ACS family tartrate transporter-like MFS transporter (Paraburkholderia graminis OAS925)
MTSISPGMAADSVNDSSLEQQAVRKAAWRFIPLLALAYFFNYLDRTSVGFAALTMNKELG
LTATQFGWGAGIMFAGYCIFEVPSNLALYRFGARRWLARIMITWGLMAAATSAAVGPNSF
YAIRLLLGIGEAGFFPGVIFFLAVWFPAQYRTRVLAWFTVSTPLSSLIGAPLSTWLLQLD
GVLGLAGWRWMFIIEGLPACVLGFLVLKMLADRPADAKWLSPIEREALQGAFDREASSGR
KEKHFGAALKDVRVYILAMISFGFTMGSYGIGIWLPQMLKGHGMSVTQTGWLSAVPYFFA
TIALLWWAKRVDRRGGAIANLAAGLLIGAVALGVSTHFHQLGRALLGVTLALIGTIAGRT
IFYTLPARFLSGQAAAGGLALINSIGALGGFAGPYLVGYLKDSFGTFTAGMMGLAIVLGI
TTLLTLSLYAFNRDQ