Protein Info for ABIE53_006039 in Paraburkholderia graminis OAS925

Annotation: type III secretion control protein HpaP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 231 PF09483: HpaP" amino acids 140 to 231 (92 residues), 113.4 bits, see alignment E=2.4e-37

Best Hits

KEGG orthology group: None (inferred from 80% identity to bug:BC1001_6054)

Predicted SEED Role

"HpaP protein; Type III secretion protein (YscP)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (231 amino acids)

>ABIE53_006039 type III secretion control protein HpaP (Paraburkholderia graminis OAS925)
MTIIEPRPLRIIPSDADSRPAADAARARRFDYAALVRRTRSQRTPVSFDEAAGASQAECA
CAANGAADDDAHANRFGDDHARDSSAKTEAETEAHAADESARASERAIAAHEALLQRLPP
ATMPAVDALFRTQGHFLELARSLAREVAAFCADPAIGDAGNWEVRIPLDERILPDTTLYL
SLSRFWLSLRFDTRGIETRQLLFDHSAMLERELASLLNAWGTPRDIELTVW