Protein Info for ABIE53_006019 in Paraburkholderia graminis OAS925

Annotation: phospholipase D1/2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 736 transmembrane" amino acids 518 to 540 (23 residues), see Phobius details amino acids 563 to 621 (59 residues), see Phobius details amino acids 645 to 667 (23 residues), see Phobius details amino acids 674 to 696 (23 residues), see Phobius details amino acids 708 to 728 (21 residues), see Phobius details PF00614: PLDc" amino acids 156 to 181 (26 residues), 30 bits, see alignment (E = 5.5e-11) amino acids 378 to 403 (26 residues), 32.6 bits, see alignment (E = 8.8e-12) PF13091: PLDc_2" amino acids 290 to 417 (128 residues), 46.8 bits, see alignment E=3.9e-16 PF09335: SNARE_assoc" amino acids 581 to 695 (115 residues), 83.1 bits, see alignment E=3.6e-27

Best Hits

KEGG orthology group: None (inferred from 93% identity to bug:BC1001_6073)

Predicted SEED Role

"Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (736 amino acids)

>ABIE53_006019 phospholipase D1/2 (Paraburkholderia graminis OAS925)
MSEPDPMQSELLDPPSRDTADAPPAVPNGAVMDTGSTCEWILQAHRASVLIDAASYYAVL
RKVIPRARHSVFILGWDIDSRIELVPGGVDDGFPPKLSEFLCAVLDANPQLRIYLLGWDF
AMLYAFEREWLPSYKPAWHAHRRLWFRLDGRHPLGASHHQKIVVIDDSLAFTGGIDLTGS
RWDTPEHRPDDPLRKNLGKTSYEPMHDAQLMFDGPAAAAIAHLARERWRRSRRSGKAGRP
FNGKSPPRTDLWPSDIEPDFADVDLGISLTEPAYDGRPAIQQVKALHLAAVAAARRNIYI
ENQYFTANSVGSALQKRIAEPDGPDLAVVCPYRQSGWLQEATMGVLRARLHKLLKTADSN
GRYAMYAPAVDAPNGRFINVHSKIMIVDERLLVIGSANLNNRSMVLDSECCIVIDARDNP
ERQAAIARIRNRLLAEHLDSSEADVDEALARHGRLNAAIASIKSNSDSVRTLEPLTPEVP
PELRDIADGVHVLDPEAPIAANELLAQFLPEPTHRPVIAKLLVLGALALGVVALTVVWRF
TPFGHELSFAKLTSETQRLAATHFGPIAVVAMYVVAALLSVPVTLLIAVTGLVFGAIAGA
AYALTGTLIAAAAGWAVGAWLGRDAVRELAGARLNQLSERLRSKGLVAVILLRLVPVAPF
SIVNLAAGASHIRFWDFMAGTAIGMAPGVLLATSFARQLVTAVRHPTPLSLLLVAAIGVA
LVSMSLVLRRMLMRRQ