Protein Info for ABIE53_006011 in Paraburkholderia graminis OAS925

Annotation: two-component system NtrC family sensor kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 585 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 218 to 238 (21 residues), see Phobius details PF02518: HATPase_c" amino acids 470 to 575 (106 residues), 87.6 bits, see alignment E=4e-29

Best Hits

KEGG orthology group: None (inferred from 89% identity to bug:BC1001_3608)

Predicted SEED Role

"PAS/PAC sensor signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (585 amino acids)

>ABIE53_006011 two-component system NtrC family sensor kinase (Paraburkholderia graminis OAS925)
MRLAARRLKLLPRSLRRQFTLATVVLTLLIATSGLTAVYTLRVATNETRLLATGELTRMQ
AADTLVQHTLLIERESARLASTGSLDAMRASYADIIRQLQLFDRLSDRLAAANDDDVSVL
DLHQASQLFRNTVNIVAQLRESELSAAIAHAPNVADKNSTAARADSQTLASRDRFSDGLR
QQASAMVASAQLQSDRCTQEFQQAVQRLAATSARHERWITGLVAVSLLFAWLVAHAFLGK
HVLARLEVVSSNLRSGDPADEQHVSRIVKGRDEIGEMARAVEQFQDDRRQLAHAYAALRE
EKARQEALINELAQAHSQLLQSEKLASIGQLAAGVAHEINNPVGFVNANLGTLQRYMADL
LTALAAYERSEAELIAESRAALIELKREIDIDYLRSDIPTLLSESVEGLQRVKRIVQGLK
DFSHVDKAEKQWANLESNLDTTINIVWNELKYKAELKREFGAIPELECIPSQLNQVFMNL
LMNAAQSIEGHGHIVVRTGHDETSVWIEVEDSGQGIKPEHRDRIFDPFFTTKPVGTGTGL
GLSISYGIVRKQGGRIEVRSEVGHGSTFRVVLPKSPEEALAASAE