Protein Info for ABIE53_005985 in Paraburkholderia graminis OAS925

Annotation: signal transduction histidine kinase/CheY-like chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 717 transmembrane" amino acids 24 to 46 (23 residues), see Phobius details amino acids 300 to 322 (23 residues), see Phobius details PF02518: HATPase_c" amino acids 463 to 579 (117 residues), 63 bits, see alignment E=3.4e-21 PF00072: Response_reg" amino acids 605 to 713 (109 residues), 58.2 bits, see alignment E=9e-20

Best Hits

KEGG orthology group: None (inferred from 93% identity to bug:BC1001_3636)

Predicted SEED Role

"FOG: PAS/PAC domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (717 amino acids)

>ABIE53_005985 signal transduction histidine kinase/CheY-like chemotaxis protein (Paraburkholderia graminis OAS925)
MQRAERVAVDFPMPSRNFAATRRMLLIVLAVSILFPLACLAGYGYFDYQRRIADSNDVID
RLVRVAEEQAVKVLDLNQQMASRIVELIGTEDDAQIRAREAELNRQLREIGGDFPQVASI
YLIGANGDLLVSTRAYPAPTVSVSQREDFIAARAMRPHPYFSLPMLGTLSQTNVFNTSIG
RIGADSKFLGVVSVALRSEYFSRFYRELTNGDPSLALSLYRQDGSLLVRYPPWPGGVQPP
AANAFGAALRDKQLSGHVRVKSPVDGVERLVAFRRVGDYPLYVSSAYATGSIVDAWRRHF
IVIAALTAVPCIAIWMLVLYSLRQLDGERVAWERWQGEVAMRLSAEASSRQLQRMGALGN
LVANVAHDFNNLLMVVSANIELARLKRYNNLEKEMTAVQRATATAESLTRRLLSVAKKQP
LKQEPIDLRKWMPGAAPLIEAALGDKIELALSIVDDVWPVLADPTDLELAIMNLAVNARD
AMPRGGRFVIRCQNNRLVGSDTLLPDGEYVLIACSDDGEGMPESVARRAFEPLFTTKLSG
SGAGLGLAQVLSMCEQAGGTAKIDSVPGSGTTVRLYLPRYRERRATHAASQTVVEQPALR
HAGMVLLVEDNEDVAAGVAAVLETFGCEVRHEPTADQAFDVLNGGERFELVLSDIQMPGK
LNGIDLAERVRSTWPSQKIALMTGYADELERARRIGVAILAKPFDIEELHALVACES