Protein Info for ABIE53_005746 in Paraburkholderia graminis OAS925

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 45 to 64 (20 residues), see Phobius details amino acids 77 to 95 (19 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 163 to 183 (21 residues), see Phobius details PF03729: DUF308" amino acids 80 to 150 (71 residues), 28.9 bits, see alignment E=5.5e-11

Best Hits

KEGG orthology group: None (inferred from 66% identity to bcn:Bcen_6458)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (191 amino acids)

>ABIE53_005746 hypothetical protein (Paraburkholderia graminis OAS925)
MNERQMSGIAARDEWWLMRYYFVRTAFSALWVALAFSVGQRSPEATAVLLFVYPAWDALA
NYFDMSRSGGMTEGRTQAINAVISVAAAVAVIVALNARMHWVLGVFGVWAILSGLLQLGT
AVRRWNRFAAQWAMALSGAQSALAGAYFIVQARAPTPPAISRVAAYAAVGAIYFLVSALW
LYVRRLRRETA