Protein Info for ABIE53_005739 in Paraburkholderia graminis OAS925

Annotation: TPR repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 198 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF08238: Sel1" amino acids 74 to 109 (36 residues), 40.3 bits, see alignment 1.6e-14 amino acids 111 to 146 (36 residues), 19.8 bits, see alignment 4.8e-08

Best Hits

KEGG orthology group: None (inferred from 95% identity to bgf:BC1003_2136)

Predicted SEED Role

"FOG: TPR repeat, SEL1 subfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (198 amino acids)

>ABIE53_005739 TPR repeat protein (Paraburkholderia graminis OAS925)
MGYRQLAPSAVLILAACAHDQSASQFVRICDDSGCAERPKSQIALDASRNGHDSAETDSD
RRIAALVKAGETNPRAAYDLGLRYFRGDGVRQDSYQALKWMRKAAEGGDLQAQKALGRFY
LFGLEEMGPDPREAEKWLMIASERGDKESGKLLAQARAAKQSDQDYYRWQTEARALYGNW
YADYPYQGYWQGRGWYWY