Protein Info for ABIE53_005714 in Paraburkholderia graminis OAS925

Annotation: iron(III) transport system substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF01547: SBP_bac_1" amino acids 52 to 298 (247 residues), 48.8 bits, see alignment E=2.1e-16 PF13531: SBP_bac_11" amino acids 52 to 302 (251 residues), 52.9 bits, see alignment E=8.8e-18 PF13416: SBP_bac_8" amino acids 58 to 315 (258 residues), 79.4 bits, see alignment E=8.3e-26 PF13343: SBP_bac_6" amino acids 95 to 309 (215 residues), 50.5 bits, see alignment E=4.1e-17

Best Hits

KEGG orthology group: K02012, iron(III) transport system substrate-binding protein (inferred from 96% identity to bgf:BC1003_5556)

Predicted SEED Role

"ABC-type Fe3+ transport system, periplasmic component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (362 amino acids)

>ABIE53_005714 iron(III) transport system substrate-binding protein (Paraburkholderia graminis OAS925)
MHISLKLLAAAAAFAAHSTWAAFPAGYPGDYQATVDAAKKEGKLIVYSVTDTALVRPLIK
DFESLYGVKVEYNDMNSTELYNRYISENAASSTSADVLWSSAMDLQVKLVNDGLMATYES
PEAKQLPQWAQYQKQAYGTTYEPLAIVYNKRLLSAGEVPQTRADLIKLLQSKPDQFKGKV
TTYDIEKSGVGFNYLTQDARVNPQVTWDLVKAMGATGPKLQSSTGAMMERISSGENLIGY
NILGSYALTKAKKDPSIGYVYPKDYTLVVSRLVTISKKAKSPNAAKLWVDYLLSQRGQTL
LANQASLFSIRSDVEGETSMAGLTKQLGDSLKPIPIGAGLLVYLDQSKRLEFLKQWQQSI
KR