Protein Info for ABIE53_005713 in Paraburkholderia graminis OAS925

Annotation: iron(III) transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 589 transmembrane" amino acids 37 to 58 (22 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details amino acids 129 to 154 (26 residues), see Phobius details amino acids 171 to 193 (23 residues), see Phobius details amino acids 228 to 253 (26 residues), see Phobius details amino acids 279 to 299 (21 residues), see Phobius details amino acids 328 to 351 (24 residues), see Phobius details amino acids 387 to 412 (26 residues), see Phobius details amino acids 424 to 450 (27 residues), see Phobius details amino acids 460 to 480 (21 residues), see Phobius details amino acids 508 to 528 (21 residues), see Phobius details amino acids 534 to 555 (22 residues), see Phobius details amino acids 562 to 585 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 106 to 307 (202 residues), 45.7 bits, see alignment E=3.3e-16 amino acids 411 to 560 (150 residues), 40.4 bits, see alignment E=1.4e-14

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 98% identity to bug:BC1001_3853)

Predicted SEED Role

"ABC Fe3+ siderophore transporter, inner membrane subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (589 amino acids)

>ABIE53_005713 iron(III) transport system permease protein (Paraburkholderia graminis OAS925)
MLFTSATGPRDAAPLAADDGPIGALPRGRLQPLAGMLRWLVVAVLTVAVALPLGFILFQS
VLNAPFFDANRTLGLTGFEFIFSDPDFWSALKNSFVIASGMLFISIPLGGILAFLMVRTD
LPGRRWLEPLLLTPVFVSPMVLAFGYVVAAGPVGFYSVWWKTLFGSAEAPWTVYSILAIT
VIVGLTHVPHVYLYSSAALRNLGSDVEEAARVAGARPFRVALDVSLPMTLPALLFAGVLV
FFLGFEVFGLPLVLGDPEGHLVLATYLYKLTNKLGVPSYHLMAAVAVCIVAITFPLVLLQ
RSLLKRANRFVTVKGKAGRQTVLPLGAWRWVALAIVALWLLLTVFVPISGITLRAFVTNW
GEGVNLADVLTLANFTELFEQDNLVRAILNTLGIGIFGGALAVGFYSLVAFAGHRRNDWA
TRLLDYLVLLPRAVPGLLAGLAFLWIFLFVPGVKELKNSMWSIWIAYTVVWLAYGMRLIQ
SALLQVGPELEEAGRSVGGTRSRVSLDVTLPLVRFGLLAAWLLIFMIFEREYSTAVYLLS
PGTEVIGALLVSLWATGAVDQVAALSVINIAMVGAGLGVALRFGVKLHG