Protein Info for ABIE53_005506 in Paraburkholderia graminis OAS925

Annotation: transcriptional regulator of acetoin/glycerol metabolism

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 712 PF01590: GAF" amino acids 69 to 197 (129 residues), 39 bits, see alignment E=4.5e-13 PF00158: Sigma54_activat" amino acids 356 to 519 (164 residues), 211.1 bits, see alignment E=3.7e-66 PF14532: Sigma54_activ_2" amino acids 368 to 524 (157 residues), 63.9 bits, see alignment E=8e-21 PF07728: AAA_5" amino acids 376 to 495 (120 residues), 26.1 bits, see alignment E=3.2e-09 PF02954: HTH_8" amino acids 632 to 668 (37 residues), 44.1 bits, see alignment 5.4e-15

Best Hits

KEGG orthology group: None (inferred from 91% identity to bug:BC1001_3954)

Predicted SEED Role

"Transcriptional activator of acetoin/glycerol metabolism"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (712 amino acids)

>ABIE53_005506 transcriptional regulator of acetoin/glycerol metabolism (Paraburkholderia graminis OAS925)
MSLLADSSMHVREILNVVNHQLATRPTSEPVAQSWARCVNEFQLDPSRFVTPPILTEYEL
SSRREAMGDLIACSKLEMTTLYQQLADPELAVVLVDAGGVIVHQVSSVPFAEAVASDGFR
VGALWSEREAGTNGMGTCLAERDCIAVCQHEHFYPRYTSLTCSAAPIFDDSGEIAGVLDV
TSRSKLLQQHSLVLVGMSRQMIENRLIDARYRHANMIHFHSRPEFVGTLHGGKLAVADDS
TVLAANRSALFQLGFRSLGELRGRRIEEAFNASLEDMIARSIRGSFHPVTVYSANATNRF
FLIAQAAQNASGRGARVAVAGPASASTSASAPRASASDKRPPPARLDEIAHLEFGDPRMA
SQIQLGARVVQRKIPIILRGQTGTGKEVFAQALHSISPHSSGPFVPVNCASLPENLIESE
LFGYRAGAFTGAQREGRRGKIVQANGGTLFLDEIGDMPLALQARLLRVIEEHEVTPLGAE
TTVKVNFQLISASHRNLLELVHSGQFREDLYYRLKGVELNLPPLAERVDKLPLIHHLLAA
ETDDDPPELTREAEQALLSYAWPGNIRQLRHVLQMAIALCDGQPIRCEDLPVEVTQREPE
VASPAAPQAVQPAPHADDDPDLSALNAIQLNERETVLAMLEENRWNVSNVAKALGISRNT
LYRKMRRLQIRLSHDGSGNDGLEADDAADEITSDAAAPEGSPGDAAHRAHDA