Protein Info for ABIE53_005475 in Paraburkholderia graminis OAS925

Annotation: YVTN family beta-propeller protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 379 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF10282: Lactonase" amino acids 197 to 346 (150 residues), 30.8 bits, see alignment E=9.4e-11 PF21783: YNCE" amino acids 206 to 305 (100 residues), 40 bits, see alignment E=1.6e-13 PF00400: WD40" amino acids 280 to 305 (26 residues), 12.3 bits, see alignment (E = 0.00012)

Best Hits

KEGG orthology group: None (inferred from 85% identity to bug:BC1001_3984)

Predicted SEED Role

"surface antigen"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (379 amino acids)

>ABIE53_005475 YVTN family beta-propeller protein (Paraburkholderia graminis OAS925)
MLETRFRKTTRGRPIVSALIAAGMVAATAFGAASAHAAAPLAYVTSEKGGVGVIDLDKMT
LTRTFPVGADGPRGLSLNADGSRLLVANKNTGDLAVIDTASGEVVQRVKIGQNPEFVRVH
NGYAYVTYEPGEDGGPPAASGQSGKPAEKPGEAQAGKPHADDDDDANKPPAEIAIVDMKS
WRVVRSVTSGHETEGIEFSRDGKNMLVTNEGDDTVSVYHARTGAPVRTVKLAAGGRPRGI
RLSPDGKDYVVTLESLSKLVVIDARTFKVKKTVDTKLGPYGVAYGPDGKRLFVAAARDKT
VQVFDGKSYEHLADVPVGQRCWHFSFTPDGTKLLVACGRSDAVYVLDARSYQPVTQIGQL
PLAWGIVTYPHSDGSIESH