Protein Info for ABIE53_005450 in Paraburkholderia graminis OAS925

Annotation: aerobic C4-dicarboxylate transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 452 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 44 to 67 (24 residues), see Phobius details amino acids 81 to 103 (23 residues), see Phobius details amino acids 146 to 171 (26 residues), see Phobius details amino acids 190 to 213 (24 residues), see Phobius details amino acids 227 to 251 (25 residues), see Phobius details amino acids 265 to 281 (17 residues), see Phobius details amino acids 302 to 328 (27 residues), see Phobius details amino acids 334 to 363 (30 residues), see Phobius details PF00375: SDF" amino acids 13 to 405 (393 residues), 377.4 bits, see alignment E=4.3e-117

Best Hits

Swiss-Prot: 58% identical to DCTA3_RALSO: C4-dicarboxylate transport protein 3 (dctA3) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K11103, aerobic C4-dicarboxylate transport protein (inferred from 89% identity to bph:Bphy_6387)

MetaCyc: 54% identical to C4 dicarboxylate/orotate:H+ symporter (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-121; TRANS-RXN-121A; TRANS-RXN-121C; TRANS-RXN-122A; TRANS-RXN0-451; TRANS-RXN0-517; TRANS-RXN0-553

Predicted SEED Role

"Na+/H+-dicarboxylate symporters" in subsystem Propionyl-CoA to Succinyl-CoA Module

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (452 amino acids)

>ABIE53_005450 aerobic C4-dicarboxylate transport protein (Paraburkholderia graminis OAS925)
MLVSKGRKIVSKLYVQVLIGIVAGILVGHFYPDIGSQLKPLGDLFIKLIRMLLAPIIFAS
VVVGIARMNDLHEAGRVGVKAVVYFEVASTIALLIGMVVVNVIKPGSGMNVDPSHIDGAA
IATYTHAAKQHGMLEFFMSIVPNSIVGAFANGEMLPIIFFSVLLAISLAKLGPRTAPFVD
MLDMFLQGMFGVVRIVMYVAPIGAFGGMAFTIAKYGIGTLASFGELMLCLYLTSIFFVVV
VLGFVMRLCGLSLWKFLRYIKDEILITLGTASTEAVLPQMLIKMEKMGCSRPVVGMVLPT
GYTFNADGTAIYLTMAALFIAQAMNIHLSIWDQLLVLAVLLLTSKGSAGVAGAGFVALAA
TLASMHKIPVEGLVLLLGVDRFLNEARAVTNLIGNGVATVVVARWEGQIDMDRARVVLNR
ENTDEIEELRPAAHPAAEPASASEAPVGSNAH