Protein Info for ABIE53_005318 in Paraburkholderia graminis OAS925

Annotation: filamentous hemagglutinin family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 823 signal peptide" amino acids 1 to 43 (43 residues), see Phobius details PF05860: TPS" amino acids 43 to 259 (217 residues), 81.2 bits, see alignment E=1.3e-26 TIGR01901: filamentous hemagglutinin family N-terminal domain" amino acids 78 to 148 (71 residues), 61.3 bits, see alignment E=3.2e-21

Best Hits

KEGG orthology group: None (inferred from 61% identity to bph:Bphy_5862)

Predicted SEED Role

"Large exoproteins involved in heme utilization or adhesion"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (823 amino acids)

>ABIE53_005318 filamentous hemagglutinin family protein (Paraburkholderia graminis OAS925)
MSFRLIPRPVQGTLRTGIAARHRSIALALWLAGLIPASVAIAAGVLPQGGQYVGGQGSIN
TSGNNLIVTQPGSTRGVIDWNSFSIGKGNAVMFQNGSGATLNRVTGGSLSAILGKLSATG
DVYLINPQGIVVGPSGVISTGGRFLASTLDVCNCAFMNGGALAFAGDSNASVVNLGKISS
TGGDVFLIARNAVVNAGTVEAPNGTAELGVGANVLLQDSSSGKQLFVQTGSKGTVANAGA
LRAAQINLQAADGNVYALAGGGTRIRATGTATRDGHVWLVADTGSVAQRGTIVASNADGS
GGTVDTHALNLSFGRDARVLASQWNVTSPVFTIDAAAAGALRRSLDAGTSVNVTTTGANG
VSGDLSVASGLNWNGAAALSLAAYHDVSIASGVTLKNSGSGNLTLRADASGIDNGGSIAN
HGTLDWSASTGIVSALYDMTGTYSPGTVLTNSAWTAAPFSGLLTQATAYKLVNSLNDLQQ
VSADLAGNYALGKDIDASATSGFPPAFAFTSIGDGATPFSGQFDGMGHAISGLTLSRTVL
VTPGSITGGPDQRAAGLFGVIGTTGVVRNVNVNGNISDPNDYGSYGILAGFNYGLVTYVR
TSGSASDFGGYSYASSTGGLVGYNYGTITRSGSSVNVLAEGTPGGLVGINAGTIRQSYAT
GAVTAEAHTGGGGGLAGSNSGLISQSYATGQVSFQPNYCGGGNGTACTDGSAALVQRNDG
TIEQSFATGQVIQSIQPALGPPALGVASTNNGTIAGDVYWDTQTTHATRDVYSGTGTSAA
KGLTTAEMSVPSSFGPTYDFSSTGVWAMPAGATHPVLRWQLAE