Protein Info for ABIE53_005308 in Paraburkholderia graminis OAS925

Annotation: ribulose-bisphosphate carboxylase large chain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF02788: RuBisCO_large_N
  • amino acids 25 to 138 (114 residues), 26.1 bits, E=8.9e-10
• PF00016: RuBisCO_large
  • amino acids 148 to 428 (281 residues), 256.7 bits, E=2.9e-80

Best Hits

KEGG orthology group: K01601, ribulose-bisphosphate carboxylase large chain [EC: 4.1.1.39] (inferred from 88% identity to bpy:Bphyt_7230)

Predicted SEED Role

"similar to ribulose-1,5-bisphosphate carboxylase, Type III"

MetaCyc Pathways

• Rubisco shunt (10/10 steps found)
• Calvin-Benson-Bassham cycle (11/13 steps found)
• ethene biosynthesis V (engineered) (19/25 steps found)
• 1-butanol autotrophic biosynthesis (engineered) (20/27 steps found)
• photosynthetic 3-hydroxybutanoate biosynthesis (engineered) (19/26 steps found)
• oxygenic photosynthesis (12/17 steps found)
• nucleoside and nucleotide degradation (archaea) (1/10 steps found)

KEGG Metabolic Maps

• Carbon fixation in photosynthetic organisms
• Glyoxylate and dicarboxylate metabolism

Isozymes

Compare fitness of predicted isozymes for: 4.1.1.39

Use Curated BLAST to search for 4.1.1.39

Protein Sequence (432 amino acids)

>ABIE53_005308 ribulose-bisphosphate carboxylase large chain (Paraburkholderia graminis OAS925)
MTDAQQPHGGDRDSLEADYLIETPLDPTRVAEIMAGEQSSGTFVRVANETDALRARSRAS
VLRIDEMEPAAQPSLHSSWLARQGARGPWRRARVTLSFPLANIGANLPTLAATVAGNLYD
LGEVTGMRLLSLRLPASYRARFETPRHGVQGTRALTQVTGGPLIGTIIKPNVGLSAEETA
ALVRDLCEAGVDFIKDDEVSANPAHAPLAERVRAVMSEVRRYRERSGRTVMVAFNITDDL
DAMRRHAELVEREGGTCVMASINWCGFSAIQTLRRATPLVLHAHRNGYGMMSRDPSLGIS
FQAYQTLWRLAGVDHMHVHGLAGKFAQSDDEVIESARDCATPLAAGCDDTVLPAFSSGQW
AGTAQATFDAVRSTDLLFMSGGGILAHPDGPAAGVMSVRQAWAAVEARTPVPVYAERMPE
LRRALEFFGGRK