Protein Info for ABIE53_005287 in Paraburkholderia graminis OAS925

Annotation: glycosyltransferase involved in cell wall biosynthesis

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 PF13439: Glyco_transf_4" amino acids 26 to 124 (99 residues), 37 bits, see alignment E=7.1e-13 PF00534: Glycos_transf_1" amino acids 177 to 314 (138 residues), 72.1 bits, see alignment E=8.2e-24 PF13692: Glyco_trans_1_4" amino acids 178 to 313 (136 residues), 60.7 bits, see alignment E=3.9e-20 PF13524: Glyco_trans_1_2" amino acids 265 to 338 (74 residues), 26.2 bits, see alignment E=1.6e-09

Best Hits

KEGG orthology group: None (inferred from 90% identity to bgf:BC1003_4029)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (367 amino acids)

>ABIE53_005287 glycosyltransferase involved in cell wall biosynthesis (Paraburkholderia graminis OAS925)
MTRLPVRIAQVAPLYESVPPFAYGATERVVSYLTEELVRRGHELTLFATADSRTAARLVP
ICERGLWRDSAVWDTLTHHVRQLARVADLAHEFDVVHFHGDPLHFPLARSLPCKSLTTLH
GQLLPVDHGPLFREFASAPLVSISDDQRKPVPFANWQATIHHGLPRDEFEFEPRAGSYLL
FLGRIMPGKRPDLAVEIARRAGLPLKMAGKVHPGEREYFTEQIEPLLERSRDFTDYLGEV
GGTLRKELIANARALIFPVEWAEPFGMVMIEAMACGTPVIAFGRGAVPEVLEHGVSGFIV
DNVEEAVQAVARIGELDRAQCRRAFDARFTAARMADDYLRVYERIVAGSRAAVPASDSDA
DAQQVCG