Protein Info for ABIE53_005232 in Paraburkholderia graminis OAS925

Annotation: MFS family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 transmembrane" amino acids 31 to 50 (20 residues), see Phobius details amino acids 57 to 80 (24 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 157 to 181 (25 residues), see Phobius details amino acids 192 to 211 (20 residues), see Phobius details amino acids 249 to 271 (23 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details amino acids 313 to 332 (20 residues), see Phobius details amino acids 338 to 356 (19 residues), see Phobius details amino acids 377 to 399 (23 residues), see Phobius details amino acids 406 to 427 (22 residues), see Phobius details PF00083: Sugar_tr" amino acids 25 to 222 (198 residues), 71.3 bits, see alignment E=7.7e-24 amino acids 268 to 401 (134 residues), 28.5 bits, see alignment E=7.4e-11 PF07690: MFS_1" amino acids 57 to 385 (329 residues), 103.7 bits, see alignment E=1e-33

Best Hits

KEGG orthology group: None (inferred from 95% identity to bug:BC1001_5339)

Predicted SEED Role

"L-Proline/Glycine betaine transporter ProP" in subsystem Proline, 4-hydroxyproline uptake and utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (469 amino acids)

>ABIE53_005232 MFS family permease (Paraburkholderia graminis OAS925)
MATNASASGRKHRGQAGKATASGWIGSALEYYDFFIYAQAAALIFPQLFFPSGNPKIAIV
ASLATYGVGYVARPIGAFVLGHWGDTHGRKNVLLLCMFLMGFSTMAVGLLPTYHHVGLLA
PTLLVVLRLIQGFAVAGEISGASSMILEHAPFGRRGYYASFTLQGVQAGQILAAAVFLPL
AYYMEESSFNSWGWRIPFLLSALVLVAGYIIRREVEETPAFAKEDASGGVPKSPIAEAFR
YNWQDMLRVVGCSLMNVIPVVATIFGAAYAVQAAYGIGFSKSVYLWIPVIGNIVAVLVIP
FVGNLSDRIGRRLPIIVGALGAGLLSFGYLYAISIHNVALAMVMSILMWGVVYQGYNATF
PSFYPELFPTRSRVSAMAIGQNIGTTITALLPALFAYVAPPGSHNVPVTIGAITFGITII
AAVTAWSARENYRVRLSDLGQPGAVPLDKTSYDQLRAETLAASKKAVAS