Protein Info for ABIE53_005090 in Paraburkholderia graminis OAS925

Annotation: glycosyltransferase involved in cell wall biosynthesis

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF13439: Glyco_transf_4" amino acids 14 to 183 (170 residues), 55.5 bits, see alignment E=1.9e-18 PF13579: Glyco_trans_4_4" amino acids 14 to 178 (165 residues), 55.2 bits, see alignment E=2.8e-18 PF00534: Glycos_transf_1" amino acids 195 to 343 (149 residues), 91.7 bits, see alignment E=1e-29 PF13692: Glyco_trans_1_4" amino acids 198 to 330 (133 residues), 82.7 bits, see alignment E=8.2e-27 PF13524: Glyco_trans_1_2" amino acids 283 to 349 (67 residues), 33.3 bits, see alignment E=1.2e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (387 amino acids)

>ABIE53_005090 glycosyltransferase involved in cell wall biosynthesis (Paraburkholderia graminis OAS925)
MRQKIVHVTEALGGGVLHCVVLLANRQAAAGDDVVVLHSVRKDTPLNATLDKLFDPRVRR
RVVEMQTAIGVRDLSSLCRLFVELFRERPDIVHLHSSKAAALGRIATRLLGLSGCTIYSP
HGFAFLKEDTSALKAKLFLLIERTLHAMGGHIVACSKSEWRYARMLLSNPQRTSLVENAV
KLDDFGADTTRQTREQVVVCTSARVTYQKAPWRFTQLAQRLARTSNVRAVWYGDGEAEAI
DRWIDREVVELSGWIAAPELRRALQQCDIFVLPSLWEGMPIALIEAQAAGLPAVASRIVG
NRDVIVHGVTGFLASNDAELEHYTRRLIDDPQLRERMGTAAAKHALARFGDARLFRSYVG
IYRRLLSPVHAHHSPALTRALSTEVLK