Protein Info for ABIE53_004988 in Paraburkholderia graminis OAS925

Annotation: D-galactonate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 transmembrane" amino acids 35 to 53 (19 residues), see Phobius details amino acids 70 to 89 (20 residues), see Phobius details amino acids 101 to 119 (19 residues), see Phobius details amino acids 125 to 149 (25 residues), see Phobius details amino acids 160 to 182 (23 residues), see Phobius details amino acids 194 to 216 (23 residues), see Phobius details amino acids 260 to 281 (22 residues), see Phobius details amino acids 294 to 314 (21 residues), see Phobius details amino acids 326 to 343 (18 residues), see Phobius details amino acids 348 to 370 (23 residues), see Phobius details amino acids 380 to 404 (25 residues), see Phobius details amino acids 416 to 436 (21 residues), see Phobius details PF07690: MFS_1" amino acids 39 to 401 (363 residues), 150.8 bits, see alignment E=2.4e-48

Best Hits

Swiss-Prot: 47% identical to TUB3_AGRVI: Putative tartrate transporter (ttuB) from Agrobacterium vitis

KEGG orthology group: None (inferred from 95% identity to bgf:BC1003_4376)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>ABIE53_004988 D-galactonate transporter (Paraburkholderia graminis OAS925)
MKSKYTASPIDGELLAPADSTSFESRTYAKVSRRLIPFLMLCYLGAYLDRVNVGFAKLQM
LNDLRFSETVYGMGAGIFFLGYFLFEVPSNLILHRVGARKWLARIMLTWAVISASFVFVK
TPTAFYALRFLLGVAEAGFAPGVILYLTYWFPATRRAKALSLFFMAIPLAGILGGPLSGW
IMHSLHGAMNMSGWKWLFLLEALPSLVLGVAILLYLDDSIAKAKWLTESEKNLLARNVAG
DNAHTTAHVSIRSFIGDRRLWLMAAIYFCVVLGQYGLTFWLPTIIRKSGVADPLWVGVFT
AIPYLCAIVALPLVGMSADRRRERRLHLAIPMLIAAAGFAILPTLGSVPASIVCLSVAAA
GILASSSQFWSLPTALLGGMSAAAGIAAVNCFANLAGFFSPAIVGWLNDLTGRSTAGLIF
ISAAVTLGACLVFLVPAKSVNR