Protein Info for ABIE53_004971 in Paraburkholderia graminis OAS925

Annotation: MFS family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 transmembrane" amino acids 20 to 46 (27 residues), see Phobius details amino acids 52 to 72 (21 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 108 to 128 (21 residues), see Phobius details amino acids 143 to 164 (22 residues), see Phobius details amino acids 170 to 188 (19 residues), see Phobius details amino acids 226 to 245 (20 residues), see Phobius details amino acids 264 to 285 (22 residues), see Phobius details amino acids 294 to 312 (19 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details amino acids 352 to 374 (23 residues), see Phobius details amino acids 380 to 402 (23 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 314 (290 residues), 133.3 bits, see alignment E=1.1e-42 PF00083: Sugar_tr" amino acids 49 to 189 (141 residues), 60.2 bits, see alignment E=1.8e-20 amino acids 223 to 411 (189 residues), 36.9 bits, see alignment E=2.1e-13

Best Hits

KEGG orthology group: None (inferred from 92% identity to bgf:BC1003_4385)

Predicted SEED Role

"Sialic acid transporter (permease) NanT" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (440 amino acids)

>ABIE53_004971 MFS family permease (Paraburkholderia graminis OAS925)
MFRWYKESTPVERNTFWGCFAGWGLDALDVQMFTLAIPAIIAAYGIGHTQAGAISSVTLI
SSALGGWIAGALSDRFGRVRTLQMTILWFAGFTFLCAFAQNFPQLLLLKALQGFGFGGEW
AAGAVLMAETIRTEHRGRAMGAVQSAWAVGWGGAVLVYAAVFSWLPGDTAWRVMFAVGLL
PAGLVLFVRRNLKEPMRVAPVGVDAHARVSALGQIVQVFQPRVLRTTLIGAVLGTGAHGG
YYAIMSWLPTFLAKERHLSVLNTGGYLAVVIVAFWCGCMLSAYLLDRIGRRRNIALFAFC
CIVTVLAYVMLPLTNMQMLVLGFPLGLFAAGIPASLGPLFNELYPADMRGTGVGFCYNFG
RIASAGFPVLVGYMSHSMSLGAAIGIDAAIAYGLAMIAVLLLPETRGKRLRGTAPDQSAD
RTDAADATDAAHLTLNHPRS