Protein Info for ABIE53_004871 in Paraburkholderia graminis OAS925

Annotation: polar amino acid transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 64 to 83 (20 residues), see Phobius details amino acids 85 to 85 (1 residues), see Phobius details amino acids 87 to 107 (21 residues), see Phobius details amino acids 147 to 169 (23 residues), see Phobius details amino acids 183 to 207 (25 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 13 to 109 (97 residues), 106.2 bits, see alignment E=5.2e-35 PF00528: BPD_transp_1" amino acids 34 to 209 (176 residues), 74.4 bits, see alignment E=5e-25

Best Hits

Swiss-Prot: 33% identical to GLNP_RICPR: Putative glutamine transport system permease protein GlnP (glnP) from Rickettsia prowazekii (strain Madrid E)

KEGG orthology group: K02029, polar amino acid transport system permease protein (inferred from 97% identity to bug:BC1001_4965)

Predicted SEED Role

"polar amino acid ABC transporter, inner membrane subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (238 amino acids)

>ABIE53_004871 polar amino acid transport system permease protein (Paraburkholderia graminis OAS925)
MSYEWITLAGYLNDFVRASWLTLQVTLLAFVLSMVLGLLTALASASRVRLLRGIASVYIE
AIRNTPVLLQIFIVFFGLPSLGITLNAYTAGVIALGVNVGAYLAEVFRAGIQSVPRGQLE
AASILGLERSQIFMEVVLPQAARAVYPAIVNNLIQLLLGTSLLSAIALPELSGTATVINA
RTLLYIQTFTITLIAYLFLSNVLSWVAGQIGVRVFHPPLEVKKRTRRLFLVARQADRT