Protein Info for ABIE53_004734 in Paraburkholderia graminis OAS925

Annotation: methyl-accepting chemotaxis protein-1 (serine sensor receptor)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 543 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 187 to 209 (23 residues), see Phobius details PF02203: TarH" amino acids 1 to 167 (167 residues), 158 bits, see alignment E=3.6e-50 PF00672: HAMP" amino acids 209 to 257 (49 residues), 32.7 bits, see alignment 1.1e-11 PF00015: MCPsignal" amino acids 324 to 479 (156 residues), 180.7 bits, see alignment E=3.5e-57

Best Hits

KEGG orthology group: None (inferred from 95% identity to bgf:BC1003_4653)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (543 amino acids)

>ABIE53_004734 methyl-accepting chemotaxis protein-1 (serine sensor receptor) (Paraburkholderia graminis OAS925)
MFSKIKVASGLLCVLAAFCVFQLVTVGLGFWSLTRTHHDVGDLANIALKQVDAVNETTQH
LMDARINLSRAGTRMVRGGAEPTDIVQHAREQLTAAEQSFNAFSSAPKTSDENGARAAAL
AERYKKLHGALSELAQFLDANNIQAFLDQPTQSFQDAYLTELHNFTQFGNAASRASLDSI
DARMATFRVVSIVILLALVGGTFAVHLALRRGVVAPLEEAGRHFERIAQGRLDQPIAARG
TNEIGRLFSGLAKMQASVARTVQTVRESADSIHLGADEIATGNADLSARTENQAASLEET
ASSMEELTATVRQNADHARQANALAETALEATSRGSEVVDKVVDKMRGIAQSSDKIAEII
SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRGLAQRSAQSAKEIKTLISESV
AEIQGGSALVEHAGEAMSNVSASISRVTQMMAEISASSLEQSTGIEQVNQAVVQMDEMTQ
QNAALVEEAAAAAASLHQQTQQLKEAVSVFEISEAVLRTQQFDAMPVQSAQSAQFALSRM
RAI