Protein Info for ABIE53_004720 in Paraburkholderia graminis OAS925

Annotation: filamentous hemagglutinin family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 636 signal peptide" amino acids 1 to 40 (40 residues), see Phobius details PF05860: TPS" amino acids 48 to 285 (238 residues), 110.3 bits, see alignment E=8.2e-36 TIGR01901: filamentous hemagglutinin family N-terminal domain" amino acids 70 to 143 (74 residues), 76.5 bits, see alignment E=5.8e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (636 amino acids)

>ABIE53_004720 filamentous hemagglutinin family protein (Paraburkholderia graminis OAS925)
MTKKITRETSGRVTEPNYRFAVLPAMLAAALGCSSTAWAVEGGMVAAGAGTIKTQANKTT
ISQSSDKMIVNWKNFNIGQDQSVVVNQPGTSSALLNRVTTANPTQIDGVLKANGRVFVVN
PAGVVFGNGAKVNVGSLVASTLDVNDQQFMEGGKLVQNKRYLNFSASGGEGKVTNNGQLT
AQESVALLGPQVVNNGSIRAKDVALGAANGVAMAINDSGFSVQVGRQAEQALAANYGVIV
AKGGNATLSAAATGAVLGTVIQNNGQIEATSASAGQGGTVQLASRDGGKISANGQMTADS
GISITSSAVRGNVAPAFYQMFDSSAAPRAVSPAPSSREVTVGAGATLKTGGSVQVHSDGG
RVDMNGLINAGGDVNIGSAAYYGDNMTVPDASGVVTTNGRINARSVYLDGADVNVNAPIR
ALDSVYAQTYTGDMHQRANVMATTGSVNMISGANLVQADGVNTSAGTGVTLKSESRLPVW
PRRPNGSLRVANVQAKTINIDGGDVTLTGNVKADGNISVNSRMYNPPCPADMACIAVMAG
GQLSQTGNVVSGNGDVALHADASLSQSRFSRTKAGNNVTLSGRNVETGTVQAGNRITVDA
NFAHLGGKLTAQEINLPANTTNKDGNIRILPKSANL