Protein Info for ABIE53_004705 in Paraburkholderia graminis OAS925

Annotation: autotransporter adhesin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1257 transmembrane" amino acids 38 to 60 (23 residues), see Phobius details PF13018: ESPR" amino acids 1 to 39 (39 residues), 37.8 bits, see alignment (E = 4.1e-13) PF05658: YadA_head" amino acids 272 to 297 (26 residues), 11.5 bits, see alignment (E = 6.7e-05) amino acids 344 to 369 (26 residues), 15.8 bits, see alignment (E = 2.8e-06) amino acids 472 to 498 (27 residues), 27.5 bits, see alignment (E = 6.3e-10) amino acids 724 to 750 (27 residues), 27.5 bits, see alignment (E = 6.3e-10) amino acids 903 to 929 (27 residues), 25.2 bits, see alignment (E = 3.2e-09) amino acids 1059 to 1085 (27 residues), 18.4 bits, see alignment (E = 4.5e-07) amino acids 1073 to 1099 (27 residues), 16.8 bits, see alignment (E = 1.4e-06) amino acids 1101 to 1125 (25 residues), 23.1 bits, see alignment (E = 1.5e-08) PF05662: YadA_stalk" amino acids 409 to 450 (42 residues), 36.2 bits, see alignment (E = 1.3e-12) amino acids 537 to 576 (40 residues), 43.4 bits, see alignment (E = 7.3e-15) amino acids 666 to 707 (42 residues), 22.9 bits, see alignment (E = 1.9e-08) amino acids 789 to 828 (40 residues), 38.3 bits, see alignment (E = 2.8e-13) amino acids 947 to 980 (34 residues), 35.8 bits, see alignment (E = 1.8e-12) amino acids 1009 to 1043 (35 residues), 21.5 bits, see alignment (E = 5e-08) amino acids 1132 to 1171 (40 residues), 30.3 bits, see alignment (E = 9.4e-11) PF03895: YadA_anchor" amino acids 1199 to 1257 (59 residues), 75.1 bits, see alignment 7.4e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1257 amino acids)

>ABIE53_004705 autotransporter adhesin (Paraburkholderia graminis OAS925)
MNKAFRSVWNESTGTWVAAQEDAKGISKNSKPACKSRLSAISWSLGGTAGIALAIFSLPA
SASVLCLYDNNGKDQVSSNSTFASGCSSRYVPSSDYYALLESGSPSGAAGIVLQAGNITY
YLASTMTQNTLTMSVSDTNVLLDGLAPGAVTASSLNAISGSQLYGTASTTAAALGTTMAA
NGTIVAPGYALPQANAIDGTSGPANNVSSAFATVDTALGKLSDKLSAGIEYFHANSALAD
SSAIGSEAIAIGGAAAASSGGAIAVGQLSMSNGTAAVAIGQNATATGIANIAIGQRATNA
ATLNNSIAIGGDSKSGGQSSSLGNSADTSATTFAVAVGHSSVVTGSSGTALGAGASAATA
NSVALGSNSVANSTTLATAGFTPTGGTAISAGTAAGGEASVGSAGAERRITNVAAGLNAT
DAVNLSQLMSEDAKVNTINNNVNNLSNTVNNIVNGGGIKYFNTNSTLADSSATGTDAVSI
GGNAQATTANSVALGSNSVANSATLATAGFNPGGGAISAATAAGGEVSVGASGAERRITN
VAAGQNATDAVNVSQLQSEDAKVNQIGTSTAASLGGGSTYDSTTGTITNPTYSVGGTTVN
NVGDALTNLDGRTTQNTTNIGSLTQNINNGTVGLVQQDATSRNVTVAKDTGGTVVNFTGT
AGSRTLTGVAAGALNATSVDAVSGSQLYATNLNVSNLTNVVNNISSGGGIKYFNANSTLA
DSSATGTDAVSIGGNAQATTANSVALGSNSVANSSTLTTAGFNPGSSAISAATAAGGEVS
VGASGAERRITKVAAGQNATDAVNVSQLQSEDAKVNQIGTSTASSLGGGSTYDTTTGTIT
NPTYSVGGTTVNNVGDALSNLDGRTTQNTSDITNINNTLNNITNGGVATRYFHANTTLPD
SQATGAESVAIGGNAQSLATNSVALGSNSAADRANTVSVGSAGNERQITNVAAGTADTDA
VNLAQLKASGIINPNGTTNAAVTYDHNADGTTNYSSVTMGNGAAGGTTIRNVAAGTSGSH
AVNVDQMNAAISTATDIAKAASNPMFAADGNQDTQMASATGSYSTAMGASANAGGKQSIA
AGNNANASSEGATAIGANTQATGKGSVALGSDSVADRDNTVSVGSATNQRQVANVAAGTA
THDAVNFGQLNDAIGNLPAGMTAKTYVDQQINSVQNSVNQVARSAYSGIAAATALTMIPD
VDEDKRIAVGIGGGSYKGAQAVALGISARITDNLKIKAGAGTSAGDTTVGMGASYQW