Protein Info for ABIE53_004691 in Paraburkholderia graminis OAS925

Annotation: ACS family glucarate transporter-like MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 49 to 70 (22 residues), see Phobius details amino acids 80 to 105 (26 residues), see Phobius details amino acids 112 to 122 (11 residues), see Phobius details amino acids 147 to 161 (15 residues), see Phobius details amino acids 168 to 187 (20 residues), see Phobius details amino acids 228 to 249 (22 residues), see Phobius details amino acids 261 to 286 (26 residues), see Phobius details amino acids 298 to 316 (19 residues), see Phobius details amino acids 322 to 344 (23 residues), see Phobius details amino acids 363 to 381 (19 residues), see Phobius details amino acids 387 to 404 (18 residues), see Phobius details PF07690: MFS_1" amino acids 17 to 372 (356 residues), 217.8 bits, see alignment E=2e-68 PF00083: Sugar_tr" amino acids 40 to 183 (144 residues), 37.3 bits, see alignment E=1.6e-13

Best Hits

KEGG orthology group: None (inferred from 96% identity to bug:BC1001_4803)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (428 amino acids)

>ABIE53_004691 ACS family glucarate transporter-like MFS transporter (Paraburkholderia graminis OAS925)
MKRFRVTSATSIVLLMLCIMYFITYLDRVNVSTAAAGFGKEFHLSHTEVGLVFSAFAYPY
LLFQIIGGWVSDRFGARRTLLACGAVWGIATLLTGFAGGLISLLAARVLLGFGEGATFPA
ATSAMARWVAKEKRGFAQGITHAASRVGNAVAPGIVVLVMANWGWRESFYICGAFSLLWV
VVWALTFTEHPKDHPRITKEELEVLPAPKAKSAGVPWSKLFRRMAPVTIVYFCYGWTLWL
FLSWIPQYFLHSYHLELKKSAIFASAVFLAGVVGDTLGGIVTDFIYTRTGSLKRARSWMV
SVCMFFCLLSLIPLMFTHHLYLSMACLASGFFFAEMTIGPMWAIPMDIAPDASGTASGMM
NTGSALAAIISPVVGGFLIDYFGSWELPFVGSMLLMALGVVLAFRMQPESKFAGNAADKG
QVSTSMGV