Protein Info for ABIE53_004634 in Paraburkholderia graminis OAS925

Annotation: chloramphenicol-sensitive protein RarD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 signal peptide" amino acids 10 to 11 (2 residues), see Phobius details transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 38 to 56 (19 residues), see Phobius details amino acids 76 to 96 (21 residues), see Phobius details amino acids 107 to 125 (19 residues), see Phobius details amino acids 132 to 149 (18 residues), see Phobius details amino acids 154 to 171 (18 residues), see Phobius details amino acids 180 to 206 (27 residues), see Phobius details amino acids 213 to 234 (22 residues), see Phobius details amino acids 241 to 263 (23 residues), see Phobius details amino acids 269 to 291 (23 residues), see Phobius details TIGR00688: protein RarD" amino acids 8 to 262 (255 residues), 192.1 bits, see alignment E=6e-61

Best Hits

KEGG orthology group: K05786, chloramphenicol-sensitive protein RarD (inferred from 94% identity to bug:BC1001_4747)

Predicted SEED Role

"Protein rarD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (296 amino acids)

>ABIE53_004634 chloramphenicol-sensitive protein RarD (Paraburkholderia graminis OAS925)
MNAYSPKRGIALSISACAMFALLSAYATLLAPLSGLDIFAWRIVWTVPGALLLVALRKRM
PILRQLLYRMVTQPTLGLAMIAAAALLGAQLWVFLWAPLHGRMLEVSLGYFLLPLVMVLV
GRFYYRERLDGLQWAAVVSAAVGVGHELWVTGAFSWPTLLVALGYPPYFVLRRKIQYDSL
AVFTVEMILLLPAAVAFVVSGGSLPLISGRIDMWLLLLPGLGLLSTLALASYLTASRLLP
VALFGILGYVEPVLLVLVSITLLGETLSAAQLATYVPIWIAVALTALHSMRFLRFG