Protein Info for ABIE53_004542 in Paraburkholderia graminis OAS925

Annotation: DNA-binding transcriptional LysR family regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 PF00126: HTH_1" amino acids 11 to 69 (59 residues), 67.6 bits, see alignment E=7.3e-23 PF03466: LysR_substrate" amino acids 98 to 297 (200 residues), 102 bits, see alignment E=3.1e-33

Best Hits

KEGG orthology group: None (inferred from 92% identity to bgf:BC1003_3877)

Predicted SEED Role

"FIG000557: hypothetical protein co-occurring with RecR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (306 amino acids)

>ABIE53_004542 DNA-binding transcriptional LysR family regulator (Paraburkholderia graminis OAS925)
MTKPHVGIADLNLLRVFLAIWDLRSLTAAGDRLGLTQPAVSHALRRLRNLFEDPLFLRTP
GGMVPTDAAYRLYPPLAQAFAIINDAVQQLAKFDPATAQRVFRVSMSDMSEFYFLPPLVS
MLDREARGIRIEVANIPVQSVSAAMRAGEIDLALGYVPGLDAGCVSQTLFVDEHVCVVRA
GHPLRKTKPTREDLAALRYVYATTNATGHRMVEQWLDELDVKREVVVRLPHFVVAPEIVM
NTDLAVIFPKSIARRFNRGKAFRVLPLPFSLPPIEIKVHSHTQSASDPGIAWLRDALFAM
FHQPQA