Protein Info for ABIE53_004433 in Paraburkholderia graminis OAS925

Annotation: MFS family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 transmembrane" amino acids 23 to 42 (20 residues), see Phobius details amino acids 53 to 73 (21 residues), see Phobius details amino acids 88 to 108 (21 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 147 to 170 (24 residues), see Phobius details amino acids 181 to 202 (22 residues), see Phobius details amino acids 250 to 271 (22 residues), see Phobius details amino acids 291 to 309 (19 residues), see Phobius details amino acids 316 to 333 (18 residues), see Phobius details amino acids 339 to 359 (21 residues), see Phobius details amino acids 370 to 393 (24 residues), see Phobius details amino acids 405 to 424 (20 residues), see Phobius details PF07690: MFS_1" amino acids 28 to 390 (363 residues), 158.1 bits, see alignment E=1.5e-50

Best Hits

KEGG orthology group: None (inferred from 97% identity to bgf:BC1003_4937)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (443 amino acids)

>ABIE53_004433 MFS family permease (Paraburkholderia graminis OAS925)
MNSALTTALDPLASAVSKVKRHVLPLFLIMFIANYIDRVNIGFVNAHMKTDLGIGAAAYG
LGSGLFFIGYALFEVPSNVLMQKYGARAWLTRIMGTWGVVAACMAFVSNETSFYVLRFLL
GVAEAGFFPGVVFYFTQWLPQKERGKAVAIFLSGSAIASVVSGPITGSLLSIRGLGLHGW
QWMFLIEGGFSIALCAVSWIFLKSRIRDASWLTADEQRVLEGAIAAEQAERVAHGGAHLP
AVKLLKDPQIVLFCLLYFAIQLTIYAATFWLPTIIRKIGGLSDFEVGMLNAIPWLIAMVA
MYCFALLSAKWRFQQAWLAVALVIAACGLFASTSGNPVLSFVAICFSAIGFKAAASLFWP
IPQGYLDARVAAAVIALINSIGNLGGFFAPATFGYLQQHTGSITGGLYGLGVASLIAAAA
AFLARNRRGDGNALRDPLQGNAH