Protein Info for ABIE53_004397 in Paraburkholderia graminis OAS925

Annotation: sugar phosphate permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 58 to 76 (19 residues), see Phobius details amino acids 94 to 111 (18 residues), see Phobius details amino acids 117 to 136 (20 residues), see Phobius details amino acids 148 to 171 (24 residues), see Phobius details amino acids 183 to 205 (23 residues), see Phobius details amino acids 246 to 267 (22 residues), see Phobius details amino acids 282 to 300 (19 residues), see Phobius details amino acids 312 to 331 (20 residues), see Phobius details amino acids 337 to 359 (23 residues), see Phobius details amino acids 368 to 389 (22 residues), see Phobius details amino acids 401 to 420 (20 residues), see Phobius details PF07690: MFS_1" amino acids 29 to 388 (360 residues), 167.6 bits, see alignment E=1.8e-53

Best Hits

Swiss-Prot: 39% identical to ABAQ_ACIBT: Quinolone resistance transporter (abaQ) from Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)

KEGG orthology group: None (inferred from 92% identity to bpy:Bphyt_6175)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (429 amino acids)

>ABIE53_004397 sugar phosphate permease (Paraburkholderia graminis OAS925)
MSAIHPSAAGDPAAALYSKLNWRLLPFLVTCYMFAYLDRVNVGFAKLQMQTDLGFSDAAY
GVGAGIFFIGYVLFELPSNLMLPKVGARKTFSRILVLWGITSACMLFVRSVPAFYAMRFL
LGVFEAGFAPGMIYYLSCWYGPARMARAIALVFVAGPLGGIVGGPVSAWLMTNLAGVGGL
AGWQWMFLVEGLPCIVLGLLTLRVISDRPAEARWLNDRERALLDGETAPTQHRADSFKAV
LKSPRVYVLALAYFSVIFPIYAISFWLPTLLKEQGVKDTLRLGWYTAIPYVAAAVCMYLA
GRSSDRLGERRYHFAIPALGAAVFLIAAILADGNLPLTLVALTLGTACLWMAYTVFWAIP
SQLVEGTAAAGGIALINTVGLSGGFWGPAVVGWTKAGTGSMHAGLFVMACAAALAAVLIL
KGKLTLKQE