Protein Info for ABIE53_004103 in Paraburkholderia graminis OAS925

Annotation: FMN-dependent oxidoreductase (nitrilotriacetate monooxygenase family)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 TIGR03860: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family" amino acids 35 to 416 (382 residues), 505.1 bits, see alignment E=7.4e-156 PF00296: Bac_luciferase" amino acids 35 to 373 (339 residues), 156.6 bits, see alignment E=5.2e-50

Best Hits

Swiss-Prot: 47% identical to DMOA_HYPSL: Dimethyl-sulfide monooxygenase (dmoA) from Hyphomicrobium sulfonivorans

KEGG orthology group: None (inferred from 97% identity to bpy:Bphyt_4538)

MetaCyc: 47% identical to DmoA (Hyphomicrobium sulfonivorans)
RXN-9740 [EC: 1.14.13.131]

Predicted SEED Role

"Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases"

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.14.13.131

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (445 amino acids)

>ABIE53_004103 FMN-dependent oxidoreductase (nitrilotriacetate monooxygenase family) (Paraburkholderia graminis OAS925)
MAYGRIRGIALRTTRISTTGRVSRRRSNAASSTASFSRILSAYTTFYQNGPDTPLREAVQ
IPINDPALIVPAMAHVTRHIGFGVTSNLTYEPPYLFARRMSTLDHLTKGRVGWNIVTGYL
DSAARGMGLAQQISHDDRYDRADDYMDVVYKLWEQSWEDDAVVRDRAARIFSQPGKVHRV
KHDGPYYSIDAIHLSEPSPQRTPVLYQAGSSSRGVDFAARHAECVFVGGQNKQLTRSIVD
DIRARAVSFGRAPDDIKIFAGITVVVGETERAAQEKFEEYRRYASAEGGIAHFSSSTGID
FSQYELDEPISYVKTESMQSAVEAISKKSVSGVWTKRKVLEQMTLGGRAKPVVGSPQQIA
DELVSWIEEAGVDGFNLTRTVMPESFEDFVDLVVPELQNRGVYKEDYDPAPTLREKLFGG
GRARLPDVHAGAQHRRARANVEQTA