Protein Info for ABIE53_004074 in Paraburkholderia graminis OAS925

Annotation: ACS family D-galactonate transporter-like MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 457 transmembrane" amino acids 32 to 50 (19 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 104 to 129 (26 residues), see Phobius details amino acids 166 to 185 (20 residues), see Phobius details amino acids 191 to 210 (20 residues), see Phobius details amino acids 265 to 286 (22 residues), see Phobius details amino acids 301 to 327 (27 residues), see Phobius details amino acids 339 to 357 (19 residues), see Phobius details amino acids 363 to 384 (22 residues), see Phobius details amino acids 392 to 419 (28 residues), see Phobius details amino acids 425 to 446 (22 residues), see Phobius details PF07690: MFS_1" amino acids 40 to 412 (373 residues), 177.2 bits, see alignment E=2.4e-56

Best Hits

Swiss-Prot: 44% identical to GUDP_ECOLI: Probable glucarate transporter (gudP) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 96% identity to bgf:BC1003_5308)

MetaCyc: 44% identical to galactarate/D-glucarate transporter GudP (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-203; TRANS-RXN0-204; TRANS-RXN0-523

Predicted SEED Role

"D-glucarate permease" in subsystem D-galactarate, D-glucarate and D-glycerate catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (457 amino acids)

>ABIE53_004074 ACS family D-galactonate transporter-like MFS transporter (Paraburkholderia graminis OAS925)
MPQPIQSSPSDANQQSGANTKMSTSTARRSNARYQILGLLAVGTMINYLDRTVLGIAAPQ
LTKELGINAAMMGLLFSVFSWSYVASQIPGGLFLDRFGSKLTYFLSMTFWSLCTLAQGLV
HGIAGLFVFRLGLGVSEAPCFPTNSRVVATWFPQSERAMATGTYTVGEYIGLAFFSPFLF
MLMGAFGWRSLFYVVGGVGIVFGGIWWLLYREPRDHPSANQAELDYIEAGGGLTQRHSSA
ASAAAPAKSGFEWRTIGRLLKHRQLTGICLGQFAGNSTLVFFLTWFPTYLATERHMGWLK
IGFFAIMPFIAASIGVMFGGLFSDWLLRRGKSANVARKLPIIAGLLLASTIILANYVESN
VAVIAILSVAFFAQGMAALGWTLVSDIAPEGLLGVTGGIFNFAANLAGIVTPLVVGFIVA
ATGSFVGALVFIGIVALIGALSYIFIVGDIKRIVLVD