Protein Info for ABIE53_004054 in Paraburkholderia graminis OAS925

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 516 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 187 to 212 (26 residues), see Phobius details PF02203: TarH" amino acids 2 to 169 (168 residues), 58.6 bits, see alignment E=1.2e-19 PF00672: HAMP" amino acids 215 to 261 (47 residues), 30.6 bits, see alignment 5e-11 PF00015: MCPsignal" amino acids 326 to 482 (157 residues), 165.7 bits, see alignment E=1.4e-52

Best Hits

KEGG orthology group: None (inferred from 96% identity to bug:BC1001_4088)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (516 amino acids)

>ABIE53_004054 methyl-accepting chemotaxis protein (Paraburkholderia graminis OAS925)
MRDLTVKNSLLAVLVVFAAMIMFGGVVGVFALGRSNENAQRLQEIATQEILANDGYKDST
RTRAALTRAYAALKERNDLATRDSALGSAQRTLDRADAETRAFAAASRFVGQDDALKQQL
VDSSNGLAATLKKAFDALQRGDTDAYVAINDRDITLAGQVYSANVEKFQNLAGALAKESA
TRTEREYGWIVAMVLTGVALALALIVATHFALRTIVIRPLQQASKLLDRIAGNDLTASIP
EGSKSEIGKLFTSMSRMQAGLAHTVSNVRVSCEAIHGGAREIAAGNLDLSSRTEEQSASL
EETAASMEELTSTVRQNADNARQASTLAASAADVAQRGGDVVQRAVHTMTAITASSHKIA
EITGMIDSIAFQTNILALNAAVESARAGEQGRGFAVVAGEVRTLAQRSASAAQEIKALIS
ASVDDVRSGNELVTQAGHTMNEIVGAVQGVATIMAEITSATVEQTAGIEQVGKAVSQMDQ
VTQQNAALVEQAAAAASALEHQAQSMNDAVSAFRLR