Protein Info for ABIE53_003975 in Paraburkholderia graminis OAS925

Annotation: NitT/TauT family transport system substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 330 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF09084: NMT1" amino acids 42 to 254 (213 residues), 154.7 bits, see alignment E=5.4e-49 PF16868: NMT1_3" amino acids 64 to 213 (150 residues), 30.2 bits, see alignment E=5.2e-11 PF12974: Phosphonate-bd" amino acids 73 to 239 (167 residues), 28.3 bits, see alignment E=1.9e-10

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 46% identity to bja:blr2837)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (330 amino acids)

>ABIE53_003975 NitT/TauT family transport system substrate-binding protein (Paraburkholderia graminis OAS925)
MKSRKPTRMAAALAFAAVCCTSHAAYAKDSLTLMLNYTVNGAVAPFYLGKVKGYYDAEGI
DLKLMEGHGSGPTVQAVATHNVDIGYADFSTMVKVAAMGAPVKAIGVLMQENPTSVVGLA
DKNIKTPQDIKGKTVAVAPGDASSQLWTMFMNKVGLKDSDFKTITGNPQTTINAVITGQA
DLLVGFATIPLISVEQATKKPARAILFADYNVNVATLSIIARDDMIKDHADLLKRFMRAT
AKSVNDSEKDPAAAVDALLKTLPAAGSRDTMIRTLQATIPFYRTPETEKAPIFHVSAKNI
DDSVAAIVQYSKLDPSANVPAKYYTGAFVP