Protein Info for ABIE53_003953 in Paraburkholderia graminis OAS925

Annotation: polar amino acid transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 605 transmembrane" amino acids 38 to 57 (20 residues), see Phobius details amino acids 81 to 102 (22 residues), see Phobius details amino acids 112 to 133 (22 residues), see Phobius details amino acids 162 to 180 (19 residues), see Phobius details amino acids 227 to 257 (31 residues), see Phobius details amino acids 263 to 288 (26 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 73 to 187 (115 residues), 49.7 bits, see alignment E=2.1e-17 PF00528: BPD_transp_1" amino acids 92 to 290 (199 residues), 59.5 bits, see alignment E=7.5e-20 PF00005: ABC_tran" amino acids 372 to 530 (159 residues), 122.9 bits, see alignment E=3.2e-39 PF13304: AAA_21" amino acids 499 to 559 (61 residues), 31.4 bits, see alignment 4e-11

Best Hits

Predicted SEED Role

"Amino acid ABC transporter permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (605 amino acids)

>ABIE53_003953 polar amino acid transport system permease protein (Paraburkholderia graminis OAS925)
MNEAAKVAVQAPGSAQAESQRDRNRYHVVPAKHRARTAGAALAAIVIALVLDSVLGNPRW
GWGVFAEWFLSEPVLSGLGRTLLLTALGASIGFALGMLIALARVSRSPLLAGSAWVFVWL
FRSIPLIVLLLILNNLGYLYETISVGIPFTGIAFGNWPTTEVVSPFCAAVLGLTLHHAAF
SAEVIRGGILSVDQGQLEAAAVLGLPRLRQARRIMLPQAMRAIVPTAFNDLISLAKGSAM
VYVLAMPELFYTVQIIYRRNLEVIPLLMVATVWYLIILSVLSAIQVYVERYFSRGATRST
TSSPFEQAIKALAGFVLRRRETAFAGESRLADAIAPSESKIPGAANPWIDQRTGGEIVIQ
KVSKSFGALKVLDNVSLTMRPGSVTVILGQSGSGKSTLLRTINHLERVDDGLIDIDGELI
GYRRDGMTLYELKERDVLRRRGDVGMVFQNFNLFPHLSVLDNIVEAPVALGRLPRKEAEQ
LARNLLARVGLADKAHAWPRQLSGGQQQRVAIARALALRPKVLLFDEPTSALDPELVNEV
LDVIKELARSGTTMVIVTHEIGFAREVADTIVFMDRGRIIEAGPPASVLNQPQHSRTREF
LSRVL