Protein Info for ABIE53_003896 in Paraburkholderia graminis OAS925

Annotation: ABC-type sugar transport system substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 173 PF13407: Peripla_BP_4" amino acids 1 to 150 (150 residues), 108.1 bits, see alignment E=2.8e-35

Best Hits

Predicted SEED Role

"Predicted L-rhamnose ABC transporter, substrate-binding component" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (173 amino acids)

>ABIE53_003896 ABC-type sugar transport system substrate-binding protein (Paraburkholderia graminis OAS925)
MAETMGKALNGQGEVAIITGQLGAVNLNERIAGIKKGLAKYPGIKVVETQGTDDDLARGV
SVVETTLRAHPNLKGIFGVSQVGGPAVAKVLNTREFGAMKGKLEALAFDDLPDTLKGLKD
GYIQGIMVQRPVTMGSLAVDHLVAQIQGQEGQPKDIDTGVTVVTKDNMTSYTK