Protein Info for ABIE53_003883 in Paraburkholderia graminis OAS925

Annotation: ribose transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 333 transmembrane" amino acids 25 to 44 (20 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details amino acids 82 to 100 (19 residues), see Phobius details amino acids 106 to 127 (22 residues), see Phobius details amino acids 136 to 156 (21 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 227 to 248 (22 residues), see Phobius details amino acids 256 to 276 (21 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details amino acids 309 to 327 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 53 to 321 (269 residues), 149.9 bits, see alignment E=4.1e-48

Best Hits

Swiss-Prot: 40% identical to ALSC_ECOLI: D-allose transport system permease protein AlsC (alsC) from Escherichia coli (strain K12)

KEGG orthology group: K10440, ribose transport system permease protein (inferred from 47% identity to bll:BLJ_1520)

MetaCyc: 40% identical to D-allose ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-42-RXN [EC: 7.5.2.8]

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.5.2.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (333 amino acids)

>ABIE53_003883 ribose transport system permease protein (Paraburkholderia graminis OAS925)
MTSTAANRADTEALSRRVIRQLRSGIGPLFAALVLICIALSIASPEFLTTSTLTNIMVQV
SVVGIAAVGGTFVIITSGIDLSVGSLVALTGMVAATVMAGSTPGAVGLGIAGLCVALAVG
AAAGALNGLAVAWLRLVPFIVTLAMMAMARGLTLAISDGRTKFDFPNAFTAFGAKTVAGL
PMPMIVMLVIFAIGHVLLRKTTFGHQVFAVGGNQEAARLAGIPVHRVVFLTYMLAGVTAA
IAGIVLAGRLNSALPSAANGLELQVIAAVVIGGTSLAGGRGSIVGTFIGVVLIGVINVGL
SLLGVNPFWTQFIQGGVIFAAVLLDALSQRRKQ