Protein Info for ABIE53_003673 in Paraburkholderia graminis OAS925

Annotation: putative MFS family arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 52 to 73 (22 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details amino acids 109 to 132 (24 residues), see Phobius details amino acids 142 to 163 (22 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 239 to 262 (24 residues), see Phobius details amino acids 276 to 296 (21 residues), see Phobius details amino acids 317 to 340 (24 residues), see Phobius details amino acids 364 to 385 (22 residues), see Phobius details amino acids 393 to 415 (23 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 347 (326 residues), 122.2 bits, see alignment E=2.5e-39 amino acids 242 to 423 (182 residues), 48.9 bits, see alignment E=4.7e-17

Best Hits

KEGG orthology group: None (inferred from 96% identity to bug:BC1001_3171)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (427 amino acids)

>ABIE53_003673 putative MFS family arabinose efflux permease (Paraburkholderia graminis OAS925)
MNWAARLIGRRFHYGWLTVAVVFLVLLAAAGTRATPSVMMVPLEHQFGWSRATISLAISV
NIALYGLMGPFAAAAMQRFGVRPTLLIALGTMAAGVALSSLMTQPWQMILVWGVMVGGST
GVAALSLSATVVTRWFTTHRGLVMGILTASSATGQLVFLPMLAAIAEHYGWRQVVWVVAA
AAAIVLPLVAFLLPERPSDVALRPYGEPHDAPAAATATKQNPLAIAFGTLAMASKTRDFW
LLFFSFFICGASTNGYVGTHLIAMCGDYGMTEVQGASLLAAMGIFDLFGTTLSGWLSDRF
NSRVLLFWYYGLRGLSLMYLPHAFGIDFFGLPLFAVFYGLDWIATVPPTVRLATDVYGKE
AAPVVFGWVVAGHQLGAAFAALGAGMLRASLGTYTVASMISGGLCLVAAVIVLRINRPAK
APEPQPI