Protein Info for ABIE53_003671 in Paraburkholderia graminis OAS925

Annotation: MFS family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 492 transmembrane" amino acids 33 to 58 (26 residues), see Phobius details amino acids 76 to 96 (21 residues), see Phobius details amino acids 105 to 124 (20 residues), see Phobius details amino acids 130 to 149 (20 residues), see Phobius details amino acids 162 to 183 (22 residues), see Phobius details amino acids 195 to 217 (23 residues), see Phobius details amino acids 286 to 309 (24 residues), see Phobius details amino acids 321 to 339 (19 residues), see Phobius details amino acids 351 to 370 (20 residues), see Phobius details amino acids 382 to 401 (20 residues), see Phobius details amino acids 412 to 434 (23 residues), see Phobius details amino acids 447 to 469 (23 residues), see Phobius details PF07690: MFS_1" amino acids 56 to 315 (260 residues), 76 bits, see alignment E=4.1e-25 amino acids 294 to 476 (183 residues), 43.4 bits, see alignment E=3.4e-15 PF00083: Sugar_tr" amino acids 71 to 464 (394 residues), 153.6 bits, see alignment E=1.3e-48

Best Hits

KEGG orthology group: None (inferred from 94% identity to bug:BC1001_3169)

Predicted SEED Role

"bll0324; putative sugar transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (492 amino acids)

>ABIE53_003671 MFS family permease (Paraburkholderia graminis OAS925)
MSAPPAADVQRKTAGIIETDLPSRLDRLPWGRFHTLIVVALGVTWLLDGLEVTLAGAVAS
ALKSSPSLHFTNADVGLAGSAYIAGAVLGALGFGWLTDRLGRRKLFFITLAVYLTATAAT
AVSWNLASFLLFRFLTGAGIGGEYTAINSTIQEFTPPRVRGWIDLAINGTFWVGAGLGAA
GSLILLDPNLLPGDWGWRACFLIGAVLALTILPMRIWVPESPRWLLTHGHERDARAIVEG
IETRFRSEGHALAADGLTRLRLRARGHTPLREVFHTLFNLHRRRALVGLSLMTAQAFFYN
AIFFTYALVLTDFYGVPGDHIGWYLLPFALGNFLGPLMLGRLFDVIGRRKMIASTYGISA
ILLTVSGYLFQQHVLTVVTQTASWMVIFFFASAAASSAYLTVSESFPLEIRALAIAVFYA
FGTALGGIAGPAFFGRLIDTHQRSEVFSGYLVGSALMLAAAVIAAIWGVDAERKSLEHVA
TPLSSVSDDEAA