Protein Info for ABIE53_003593 in Paraburkholderia graminis OAS925

Annotation: Mg2+/Co2+ transporter CorB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 transmembrane" amino acids 41 to 65 (25 residues), see Phobius details amino acids 98 to 121 (24 residues), see Phobius details amino acids 128 to 149 (22 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details PF01595: CNNM" amino acids 48 to 218 (171 residues), 156.5 bits, see alignment E=8.9e-50 PF00571: CBS" amino acids 310 to 362 (53 residues), 32.5 bits, see alignment 1.3e-11 PF03471: CorC_HlyC" amino acids 382 to 454 (73 residues), 59.3 bits, see alignment E=4.6e-20

Best Hits

KEGG orthology group: None (inferred from 98% identity to bgf:BC1003_3037)

Predicted SEED Role

"Magnesium and cobalt efflux protein CorC" in subsystem Copper homeostasis: copper tolerance or Phosphate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (466 amino acids)

>ABIE53_003593 Mg2+/Co2+ transporter CorB (Paraburkholderia graminis OAS925)
MSSAKALFSGRRRARLRQPPLLYSLHPFPLYPSRRVEQLPLWAQIGAVFLLLVCSSFFSI
SETAMMALNRHRLKHLASKNALGAKTTQGLLAHTDQLLSVVLIGNNLFNTIIPVLTTSIA
LHTFGRNNLVLSIATGIVAFLIIVFAEITPKIVGATFPEKIALPASLLIAPMMRVARPLV
WFVNLFATGILRVLHINTKGARDQRLSTEELRTIVLESGSFMPTKHRSILLNLFDLENIS
VDDVMIPRRRIEALDFDAPFEQILHQLETCYHNKLIVYQGDIDRVLGILHVRKTLAALHN
QELERETLRELLTEPYFVPTGTPVFQQLQYFQESRHRIALVVNEYGELQGLVTPEDIIEE
LIGEFTTSIPRGASSRGGWNEHGECIVAGSMPLRELNRWLQLTLPTDGPKTLNGLILEIL
EDIPDGDVCVQIRDVKLEVMRSDDQAIRTVKLFKPPARAKGKALLG