Protein Info for ABIE53_003591 in Paraburkholderia graminis OAS925

Annotation: large subunit ribosomal protein L21

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 133 PF00829: Ribosomal_L21p" amino acids 31 to 131 (101 residues), 130 bits, see alignment E=1.7e-42 TIGR00061: ribosomal protein bL21" amino acids 32 to 131 (100 residues), 117.5 bits, see alignment E=1.5e-38

Best Hits

Predicted SEED Role

"LSU ribosomal protein L21p" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (133 amino acids)

>ABIE53_003591 large subunit ribosomal protein L21 (Paraburkholderia graminis OAS925)
MSFDRAANSMYNHGFPRAVRGKNEHRVRFSMYAVIKTGGKQYKVAVGEKLKVEQIPADID
AEITLDQVLAVGEGESIKFGAPLVSGASVKATVVSQGRHKKVTIFKMRRRKHYQKHGGHR
QNYTELRIDAINA